Plant MITE

SE2250196

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4919
Zea mays
SE2250196
PIF/harbinger
To39
chr7:176761943-176762134
TTA
AGGTCCTGTTTGGAAGCAACCTATTTTTTAAGAAAT

Secondary structure and sequence

TSD TIR

5'

3'

TT   T C         G  A  TAT            CAAT     TTTT      GATAGACTAGCTTCTTGGTTTTTAAAAAACTGAGTCCAATT
  AGG C TGTTTGGAA CA CC   TTTTTAAGAAAT    TTTAT    AGCTAG                                         
  ||| | ||||||||| || ||   ||||||||||||    |||||    ||||||                                          
  TCC G ACAAACCTT GT GG   AAAAATTCTTTG    AAATA    TTTGAC                                         
AT   C T         G  -  TTT            -ACC     --CC      TCCACCAAGGTTTGTATGGTCAAATACGGAGTCAAATATCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2250196

TTAGGTCCTGTTTGGAAGCAACCTATTTTTTAAGAAATCAATTTTATTTTTAGCTAGGATAGACTAGCTTCTTGGTTTTTAAAAAACTGAGTCCAATTTCTATAAACTGAGGCATAAACTGGTATGTTTGGAACCACCTCAGTTTCCATAAACCAGTTTCTTAAAAATTTGGTGGTTCCAAACATGCCCTTA

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