SE2220197

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4920
  • Zea mays
  • SE2220197
  • Mutator
  • M19
  • chr5:77776067-77776547
  • ATTTTCTAA
  • GAGTAAAATGCA

Secondary structure and sequence

TSD    TIR
5'



3'
ATTTTCTAA            TCAAC    C         -   A           A TGTTACTTA             TC     C       C    GATGG       -     ATAAAAAAT   TG      A    C                       C    AACATTGGA        GGTCAAAAACGGGTGATGGAACTTGGCAGCCATAAAAAATCGTTGAAAAACAGGTTCGCTCAAACCGG
         GAGTAAAATGCA     AGTG TCGAACTTG CAT CTGTGTTACTT G         GGTCCCTGAACTC  AAAAT AGAAAAA GGGT     AACTTGG CAGCC         CGT  AAAATC GGTT GCTCAAACCGGATGCTGATGTGG GTGC         GTCACTTG                                                                    
         ||||||||||||     |||| ||||||||| ||| ||||||||||| |         |||||||||||||  ||||| ||||||| ||||     ||||||| |||||         |||  |||||| |||| ||||||||||||||||||||||| ||||         ||||||||                                                                    A
         CTCATTTTATGT     TCGC AGTTTGAAC GTG GATATAGTGAA C         TCAGGGGCTTGAG  TTTTG TCTTTTT CCCA     TTGAACC GTTGG         GCA  TTTTGG CCAA CGAGTTTGGCCTACGGCTGCATT CATG         CACTGTAT                                                                    
AATCTTTTA            ---CA    C         T   C           - ---------             TC     T       A    GGATA       A     ---------   CG      C    A                       -    ---------        GGTTCAACCTCGTGTGATTACTTTAAAGTCCCTGGGTTCACTGAGGTTACAACGTGCGGTGTAGTCGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End