SE2250203

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4926
  • Zea mays
  • SE2250203
  • PIF/harbinger
  • To69
  • chr5:81178131-81178273
  • TAA
  • AGGCCTTGTTCG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   C        GTTATT   --AT             G    -      AATGTA    GA       TGACT
  AGG CTTGTTCG      CCA    TCCATGTGGATTG AGTG TATTGG      TTGG  TAAATTT     
  ||| ||||||||      |||    ||||||||||||| |||| ||||||      ||||  |||||||     T
  TCC GAACAAGC      GGT    AGGTACACCTAAC TCAC ATAACT      AGCC  ATTTAGG     
AA   C        -AAAGT   AATT             -    C      -----C    AA       TATCG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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