SE2230206

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4929
  • Zea mays
  • SE2230206
  • hAT
  • Hat26
  • chr3:202151487-202151959
  • GTCCCGGA
  • TCCCGGATAGGGCTGGAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
G   C    -           ATTA               -    GCTCGAGCTCGGTGCGGCTCGGCTCGGCTCGGAGCGGCTCGCGAGCCTCGAACGAGCCGAGCCTCTTCTTCGAGCTCGTTTTTGCAGCGAGCCGAGCCGAGCCAGCTCGCGAGCCGGCTCGCGATTCTTGCAAAAATGATCAATTTATGGAATAATAATGAATATTAGATAATTTTATAGATAATAGCTCATTTT
 TCC GGAT AGGGCTGGAAA    GCTCGAGGCTCGCGA GCCG                                                                                                                                                                                                   
 ||| |||| |||||||||||    ||||||||||||||| ||||                                                                                                                                                                                                    
 AGG CCTG TCCCGACCTTT    GCTCGGCTCGGCTCG GCCG                                                                                                                                                                                                   
    C    A           ----               A    AACCGAGCCGAGCCACGCCGAGCCACTGACTTGCTCGAGCCGAGCCGAGCAGGTAAAGTGCTCGACCGCTTTCTCCGAGCCGAGCCGAGCTGGAACCGAGCGCTCGGCTGAGCCGAGCCGAGCGCTCGGTATAAGACCATGAATAGCAACGTAATAAACCACTTAATTGTAATATATAAGTAGTAGTTTCTGATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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