SE2230213

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4936
  • Zea mays
  • SE2230213
  • hAT
  • Hat37
  • chr4:48569624-48570068
  • TTGCCCAA
  • TGCCCAACAGGGCCGGGC

Secondary structure and sequence

TSD    TIR
5'



3' 
T  CC       GC     ----TAGTAAAA      -    TATACAAAATTCCGGAATATCACTCTATAAACTAGAACTATACTAATATAGGCTATAATAATATGATAAAAATATTATATTAAGAGTTGTGTCTAGCTGTCTATTCAATTTTGTATTGTATAATTTTACTTGGATAGTATTATTCTTTAAAATGAAATCTTGAACGATATTTACGTTTAAATG
 TG  CAACAGG  CGGGC            TCTAAG GCCC                                                                                                                                                                                       
 ||  |||||||  |||||            |||||| ||||                                                                                                                                                                                        
 AC  GTTGTCC  GCCCG            CCAGCC CGGG                                                                                                                                                                                       
A  CC       GA     CCTCCGTACACA      A    TGCTTGTCCCGGGGTTAGGAGGTTCCGGGGATTTTATTATCAGTGGTTATCAAATTGGTCATGTGTCAAGTCATTAAGCGAGTCATTCTTTTTATTTAGTTGATTAGAGATTCGTTTAGAAGAAGAGTACTCAGTTTAGTCAACAAATATACCACAGAAACAGAAACTAGTGCTTATGTAGAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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