SE2240214

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4937
  • Zea mays
  • SE2240214
  • CACTA
  • Ca2
  • chr7:109912715-109912980
  • AAA
  • CACTACAAGAAATCATTTAATCCATGACG

Secondary structure and sequence

TSD    TIR
5'



3' 
AAA             CA       C      AATTCTC  TGAC    TTA    A -----------         ATGGCTTCGTGACGGTTTTTTGCTATTCCATGACGAATTTTGTGAATCCCATTAAAAAAGAAACGTC
   CACTACAAGAAAT  TTTAATC ATGACG       GG    GTAA   GAAA T           GTCATGAAG                                                                   
   |||||||||||||  ||||||| ||||||       ||    ||||   |||| |           |||||||||                                                                   A
   GTGATGTTCTTTA  AAATTAG TACTGT       CT    GTTT   AAAC A           TTTTTTTTG                                                                   
AAA             AG       T      -------  ----    --T    - GTACCTAATCG         CAGTGTTTCGGTACTAATACTGCTTAAAACTATTGCAGTACATTACCCCCATTTTTTAACATTAGAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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