SE2250215

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4938
  • Zea mays
  • SE2250215
  • PIF/harbinger
  • To58
  • chr3:27099920-27100044
  • GAA
  • GGGCTACTTTGGGAACCTCAAATCACTTTCGGGATTGGAGGGGATTGAGGTGGAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
GAA      C         C       A                      A  T      GAA
   GGGCTA TTTGGGAAC TCAAATC CTTTCGGGATTGGAGGGGATTG GG GGAAAT   
   |||||| ||||||||| ||||||| |||||||||||||||||||||| || ||||||    
   CCCGAT AAACCTTTG AGTTTAG GGAAGCCCTAACTTCCCCTAAC TC CCTTTA   
AAG      C         -       G                      C  T      ATC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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