Plant MITE

SE2250217

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4940
Zea mays
SE2250217
PIF/harbinger
To74
chr5:210896992-210897227
TTA
AGGCCCTGTTTGGGACCGCTC

Secondary structure and sequence

TSD TIR

5'

3'

TT   CCC         CC    --------       ACGAAATTTGGTGGAGTTGGTGGAGCAGGTCATTAGGTGCTCCAAAAAATCGTGGAGCTAGAGCTGTAACACTTTAGAAGACAC
  AGG   TGTTTGGGA  GCTC        CAGCTCC                                                                                    
  |||   |||||||||  ||||        |||||||                                                                                     
  TCC   ACAAACCCT  CGAG        TTGAGGT                                                                                    
AT   CAC         AC    ATCCAAGA       CACACCTCGACATCAAATATTATAGTTAAATTTATCAAAATTTTTATAAAAATTAGATTTATTATATGTTTTATTGAATAGATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2250217

TTAGGCCCTGTTTGGGACCGCTCCAGCTCCACGAAATTTGGTGGAGTTGGTGGAGCAGGTCATTAGGTGCTCCAAAAAATCGTGGAGCTAGAGCTGTAACACTTTAGAAGACACTTAGATAAGTTATTTTGTATATTATTTAGATTAAAAATATTTTTAAAACTATTTAAATTGATATTATAAACTACAGCTCCACACTGGAGTTAGAACCTAGAGCCATCCCAAACACACCCTTA

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