Plant MITE

SE2230222

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4945
Zea mays
SE2230222
hAT
Hat26
chr3:186711521-186712059
TTGGCATC
TGGCATCTAGGGCTGGAAA

Secondary structure and sequence

TSD TIR

5'

3'

 T  G  TC            ATAA    C A    CG      GGCTCGAGCTCGGAGCAGTCGCTCGGCTCGGAGCGGCTCGCGAGCCTCGAGCGAGCCGAGCCGAGCCAGTATTTTGAGCTCGTTGCGCTAGGGAGCCGAGCCGGCTCGTTCCGGCTCGAGCCGGCTCGCGAGTTTGCCAAATTACTTAATATGTACAATAATGATAGATATTGGGTAATTTTATAGATAGTCAATTTGTTTCTTAACATTTTATAATAAATATATGACAA
  TG CA  TAGGGCTGGAAA    GCTT G GGCT  CGAGCC                                                                                                                                                                                                                                      
  || ||  ||||||||||||    |||| | ||||  ||||||                                                                                                                                                                                                                                      T
  AC GT  ATCCCGACCTTT    GCTC G GCTC  GGCTCG                                                                                                                                                                                                                                      
CT  G  -T            ----    - -    --      AGCCGAGCCGAGCCGAGCCACGCCGAGCCACCGACTGGCTCGAGCCGAGCCGAGCCGAGCGGGTAAAGTGCTCGACCCTTCTGTCCGAGCCGAGCCGAGCTTCCACCGAGCGCTCGGCCGAGCGACCGAGCGTGTGGGACTATATATATTAACGTAATAGATCACTTAATAATCATATATTTATATTTATATATCTATAGTAAGTAGTAATACTCATTAAATTTAATAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2230222

TTGGCATCTAGGGCTGGAAAATAAGCTTCGAGGCTCGCGAGCCGGCTCGAGCTCGGAGCAGTCGCTCGGCTCGGAGCGGCTCGCGAGCCTCGAGCGAGCCGAGCCGAGCCAGTATTTTGAGCTCGTTGCGCTAGGGAGCCGAGCCGGCTCGTTCCGGCTCGAGCCGGCTCGCGAGTTTGCCAAATTACTTAATATGTACAATAATGATAGATATTGGGTAATTTTATAGATAGTCAATTTGTTTCTTAACATTTTATAATAAATATATGACAATTAATAATTTAAATTACTCATAATGATGAATGATATCTATATATTTATATTTATATACTAATAATTCACTAGATAATGCAATTATATATATCAGGGTGTGCGAGCCAGCGAGCCGGCTCGCGAGCCACCTTCGAGCCGAGCCGAGCCTGTCTTCCCAGCTCGTGAAATGGGCGAGCCGAGCCGAGCCGAGCTCGGTCAGCCACCGAGCCGCACCGAGCCGAGCCGAGCCGAGCTCGGCTCGGCTCGTTTCCAGCCCTATTGGCATC

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