SE2230225

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4948
  • Zea mays
  • SE2230225
  • hAT
  • Hat38
  • chr5:661509-661901
  • ATTGGTCC
  • GGTCCCAGTGTTATTAAAAC

Secondary structure and sequence

TSD    TIR
5'



3' 
ATT  T  ---   TG          ---T      AAACGATGTTTAAACTACGTTTAAACGTCAAAACTCTAATTAGAGGTTGAAATCACGTTTTAGCGTTTTGGCGTTATAAACTGTAAAACGCAGTGTTTTATGCATTTTAGACCATTAGCTATTTTTGGGCCCGGTCTATTAGTTACTTTTGGGGTTCAATCTAGC
   GG CC   CAG  TTATTAAAAC    ACGTTT                                                                                                                                                                     
   || ||   |||  ||||||||||    ||||||                                                                                                                                                                      
   CC GG   GTT  AATAATTTTG    TTTGCA                                                                                                                                                                     
     T  TTA   CG          CTAT      ACCTTGCGAGTACCCCCTTTAAAACTGAAAATTTGCAAATTTGAAACAAATTTGCATCAAAATTTGTTGTATCCTTTTTATGGTTATATAGTATTAAAGTCTGTTATTATACTTCAATTTATGGTTTTGTCTCTCAAATCACCGAATGGTTTTGAAGTGGGTACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3