SE2210226

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4949
  • Zea mays
  • SE2210226
  • Tc1/Mariner
  • St11
  • chr5:136957166-136957315
  • TA
  • TACTCGCTCCGTTCCAAATTATAAGACATTTTGGGTTTTCTAGATA

Secondary structure and sequence

TSD    TIR
5'



3' 
     G                    CA      G           CATT  TT  AA    T   C    C   A
TACTC CTCCGTTCCAAATTATAAGA  TTTTGG TTTTCTAGATA    GA  TT  CTAT TAT TAGA ATA 
||||| ||||||||||||||||||||  |||||| |||||||||||    ||  ||  |||| ||| |||| ||| T
ATGAG GAGGTAAGGTTTAATATTCT  AAAACC AAAAGATCTAT    CT  AA  GATA GTA ATCT TAT 
     G                    AC      G           --AT  TT  -C    C   A    A   G
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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