SE2220231

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4954
  • Zea mays
  • SE2220231
  • Mutator
  • M1
  • chr5:29270855-29271117
  • TGAGTTTAT
  • TGAGTTTATGGCAACGACTGTTGTGCAAGCAATCTTTCTATGCAAGCGTGCAAGCAAATCATCTGATCCGTTAGATCGTGATCGAACCG

Secondary structure and sequence

TSD    TIR
5'



3' 
         T                              A                                           G     --------     CACATTTAACACTTAAACCCTTCCACCACTAGC
 TGAGTTTA GGCAACGACTGTTGTGCAAGCAATCTTTCT TGCAAGCGTGCAAGCAAATCATCTGATCCGTTAGATCGTGATC AACCG        TAAGT                                 
 |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||        |||||                                 T
 ATTTGAGT CCGTTGCTGACGACACGTTCGTTAGGAAGA ACGTTCGCACGTTCGTTTGGTAGACTAGGCAATCTAGCACTAG TTGGT        TGGTA                                 
T        -                              C                                           G     GTCTATAT     TCAAACAATCCCCAAAAAAATATTTCTAATAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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