SE2250233

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4956
  • Zea mays
  • SE2250233
  • PIF/harbinger
  • To69
  • chr5:81178131-81178273
  • TTA
  • AGGGCTTGTTCGTTTCACCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT   G        -  TCA   TTAA             -    G     -   ----C  TT     CCATAGC
  AGG CTTGTTCG TT   CCA    TCCATGTGGATTG AGTG TATTG AGT     GG  TAAAT       
  ||| |||||||| ||   |||    ||||||||||||| |||| ||||| |||     ||  |||||       A
  TCC GAACAAGC AA   GGT    AGGTACACCTAAC TCAC ATAAC TTA     CC  ATTTA       
AT   G        C  TAA   --TA             C    -     C   CATAA  CT     AAACTGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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