Plant MITE

SE2220236

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4959
Zea mays
SE2220236
Mutator
M20
chr5:5098575-5098849
AACTAGTAA
ACTAGTAAGAGGACATATCTGGTGCACATGGAGGATTGGTGCACATGGTGCACATATTAAATCACCATCACTCATTTTAAATCTAATGTCTCTAGTT

Secondary structure and sequence

TSD TIR

5'

3'

 A      AA                                                        C              A                 -ATCATTCA    -ACAAATA          C ATTACAC
  ACTAGT  GAGGACATATCTGGTGCACATGGAGGATTGGTGCACATGGTGCACATATTAAATCA CATCACTCATTTTA ATCTAATGTCTCTAGTT         ATTT        ACACCTTCCA C       
  ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||         ||||        |||||||||| |       A
  TGATCA  CTCTTGTATAGATTACGTGTACCTTCTAACCACGTGTACCACGTGTATAATTTAGT GTGGTGAGTAAAAT TAGATTGCAGAGATCAA         TAAA        TGTGGGAGGT G       
AA      -A                                                        A              C                 CAAACCATA    ACGATTCC          T CACCACC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2220236

AACTAGTAAGAGGACATATCTGGTGCACATGGAGGATTGGTGCACATGGTGCACATATTAAATCACCATCACTCATTTTAAATCTAATGTCTCTAGTTATCATTCAATTTACAAATAACACCTTCCACCATTACACACCACCACGTTGGAGGGTGTCCTTAGCAAAATATACCAAACAACTAGAGACGTTAGATCTAAAATGAGTGGTGATGATTTAATATGTGCACCATGTGCACCAATCTTCCATGTGCATTAGATATGTTCTCAACTAGTAA

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