SE2250314

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5037
  • Zea mays
  • SE2250314
  • PIF/harbinger
  • To12
  • chr10:63248094-63248298
  • TTA
  • AGGGGGTGTTTGAATGCACTAGAGATAATAGTTAGTGGCTAAAATTAGCTAGAGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                        A           -        T  -     -   CATCCAAACACCC     A     TCAGCTATCAGCTATTTTTAGTAAAT
  AGGGGGTGTTTGAATGCACTAGAG TAATAGTTAGT GGCTAAAA TA GCTAG AGA             TAGCT ATAGT                          
  |||||||||||||||||||||||| ||||||||||| |||||||| || ||||| |||             ||||| |||||                           
  TCCCCCACAAACTTACGTGATCTT ATTATTAATCA TCGATTTT AT TGATC TCT             ATCAA TCGAT                          
AT                        G           A        T  A     A   -----------TA     -     TGTTTATCAATCGATTGATCATCGAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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