SE2220315

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5038
  • Zea mays
  • SE2220315
  • Mutator
  • M17
  • chr10:9577447-9577669
  • CCGAAAAAT
  • GGAAAAAAGTTCTTTACATACCAGATGTAAAGAATCTACAGACCCTCACATATACCATCTGTTGGTCCATATAAATAGAAAAAAAACAAATTACT

Secondary structure and sequence

TSD    TIR
5'



3'
CCGAAAAAT             T      C A        --GA    ---    A         A      C  TT        TAA     AA    ---     ---TT   AA
         GGAAAAAAGTTCT TACATA C GATGTAAA    ATCT   ACAG CCCTCACAT TACCAT TG  GGTCCATA   ATAGA  AAAA   ACAAA     ACT  
         ||||||||||||| |||||| | ||||||||    ||||   |||| ||||||||| |||||| ||  ||||||||   |||||  ||||   |||||     |||   
         CTTTTTTTTAAGA ATGTAT G CTACGTTT    TAGA   TGTC GGGAGTGTA ATGGTA GC  CCGGGTGT   TGTCT  TTTT   TGTTT     TGA  
TAAAAAGCC             T      A C        GCAA    AAA    A         G      A  CT        TTG     AG    AAA     TTTTT   GA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End