SE2250317

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5040
  • Zea mays
  • SE2250317
  • PIF/harbinger
  • To38
  • chr10:30802568-30802699
  • TTA
  • GGCCCTGTTCGGTTGTTCCGGATTAGAGCCCCGGATTAATTTCTAGCCGGATTA

Secondary structure and sequence

TSD    TIR
5'



3' 
 TTA     T          T     TTA     CC     AAT       CGG    CTTC    ATT
    GGCCC GTTCGGTTGT CCGGA   GAGCC  GGATT   TTCTAGC   ATTA    TCTA   
    ||||| |||||||||| |||||   |||||  |||||   |||||||   ||||    ||||   T
    CCGGG CAAGCCAACA GGCCT   TTCGG  CCTAA   AAGGTCG   TAGT    AGAT   
ATTC     -          T     -TA     -T     -GT       -AG    -TTT    ATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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