SE2250318

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5041
  • Zea mays
  • SE2250318
  • PIF/harbinger
  • To44
  • chr10:111638887-111639021
  • TTA
  • AGGGCTGATTTGGTGGTAAGGGATCCCAAAGGGATCCATGAGGGAGAAATCCCCTTGCAATTCAATTTGAATAACAAGGGGATTCCTCCCCCATGGATCCCCTTGGGATCCCTTAGCACCAAATCAGCCCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT               G             A          A     A          CA     A
  AGGGCTGATTTGGTG TAAGGGATCCCAA GGGATCCATG GGGAG AATCCCCTTG  ATTCA 
  ||||||||||||||| ||||||||||||| |||||||||| ||||| ||||||||||  ||||| T
  TCCCGACTAAACCAC ATTCCCTAGGGTT CCCTAGGTAC CCCTC TTAGGGGAAC  TAAGT 
AT               G             C          C     C          AA     T
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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