Plant MITE

SE2250319

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5042
Zea mays
SE2250319
PIF/harbinger
To12
chr10:2423961-2424150
TAA
GAGAGTGTTTGAATGCACTAGAACTAATAGTTAGTTAGCTA

Secondary structure and sequence

TSD TIR

5'

3'

 TAA   A             C    A         A  TA         T -    TGGAATTAGCTAGCTAACAAATAGCTACCTAACTATTAAC
    GAG GTGTTTGAATGCA TAGA CTAATAGTT GT  GCTAAAATT G TTAG                                        
    ||| ||||||||||||| |||| ||||||||| ||  ||||||||| | ||||                                        T
    CTC CGCAAACTTATGT ATCT GATTATCAA CA  CGATTTTCA T AACT                                        
AATC   -             C    C         A  -C         - C    CTATAGGTTTGTGGAATCGATTATGAATAAAACCATTTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2250319

TAAGAGAGTGTTTGAATGCACTAGAACTAATAGTTAGTTAGCTAAAATTTGTTAGTGGAATTAGCTAGCTAACAAATAGCTACCTAACTATTAACTAATTTACCAAAATAAGTATTAGCTAAGGTGTTTGGATATCTCAACTACTTTTAGCCACAAACTATTAGCTCTACTGTATTCAAACGCCTCCTAA

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