SE2250322

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5045
  • Zea mays
  • SE2250322
  • PIF/harbinger
  • To33
  • chr10:116793728-116793870
  • TAA
  • AGGGCTTGTTCGGTTAGCTCTCAATCCATGTGGATTGAGTGGGATTGGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                GC       C           A           -------------    TTTGAATCCC
  AGGGCTTGTTCGGTTA  TCTCAAT CATGTGGATTG GTGGGATTGGA             TGGG          
  ||||||||||||||||  ||||||| ||||||||||| |||||||||||             ||||          A
  TCCCGAACAAGCCAAT  AGGGTTA GTGTACCTAAC TACTCTAACCT             TTCA          
AA                -A       T           C           TTTTTAACTCTTC    AACTGAATAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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