SE2220324

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5047
  • Zea mays
  • SE2220324
  • Mutator
  • M1
  • chr10:125907277-125907553
  • AATACATAC
  • GGCAACGACTGCTATGCAAGCAGTTCTT

Secondary structure and sequence

TSD    TIR
5'



3' 
AATACATAC                            CTTGCAAGCAGTTCTTCTT             A                       -AC         ACAGATACAA     --  TTGTTAGGAGTTTTTTTATAAAGATTATT
         GGCAACGACTGCTATGCAAGCAGTTCTT                   TGCAAGTGTGCAA CAAATCATCTGGTTCATTAGATT   GATCCAACT          CCATG  GT                             
         ||||||||||||||||||||||||||||                   ||||||||||||| |||||||||||||||||||||||   |||||||||          |||||  ||                             G
         CCGTTGCTGACGATACGTTCGTCAGGAA                   ACGTTCGCACGTT GTTTGGTAGACCAGGTAATCTAG   CTAGGTTGG          TCCAG  TA                             
CATACATAA                            -------------------             C                       CCA         --------CA     TG  AATTGTGAATTTGGGAAGGTGCTGGTCGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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