SE2230329

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5052
  • Zea mays
  • SE2230329
  • hAT
  • Hat17
  • chr10:96234494-96234667
  • CTTCGAGG
  • CTTCGAGGTAGGGCTGACAATGG

Secondary structure and sequence

TSD    TIR
5'



3' 
             C  AC     ------  TATAATTTTTGCACTATAAGATTTAAGGATCGAAACGGGTTAGGATCGGGCTTTATTTC
CTTCGAGGTAGGG TG  AATGG      GC                                                           
||||||||||||| ||  |||||      ||                                                            
GGAGCTTCATCCC AC  TTACC      TA                                                           
             C  CA     TAGCAC  GGTTTATCAAGAAGTGTTTTACAGTTCCGGGATTTATTTAATATCAAGTTTTTACTGAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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