SE2250346

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5069
  • Zea mays
  • SE2250346
  • PIF/harbinger
  • To53
  • chr10:141581282-141581573
  • TAA
  • AGAGCATCTCCAAGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA               -------------          ---   GCTTGTCAAGCTAAATTTTAGCTACTTAATAGCATAATAGCTCTCCAACAGACTAGTCATTTAACTTGCTAAGCTATCTGGCTCTCTAAATTAACTCATTCACTAGCC
  AGAGCATCTCCAAGA             GAGTAGCTAA   ATA                                                                                                            
  |||||||||||||||             ||||||||||   |||                                                                                                             
  TCTCGTAGAGGTTCT             ACTGAGAGAT   CTG                                                                                                            
AA               TTGAGAAATAAAA          AAA   AGAAATAAACAGATAAGTATTTATAATTTGAGATATATATTGTAGAGTAAGGTTGTCTGAGAGGTTGCATGTTCAATCGAACTGATCGCTCTCAACGATCGGTTTAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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