Plant MITE

SE2220347

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5070
Zea mays
SE2220347
Mutator
M26
chr10:98218410-98218573
TTCACGACA
ATAATTGAAATTTTGCCACTTGAAATGTT

Secondary structure and sequence

TSD TIR

5'

3'

TTCACGACACAAA   A   AA   TT      T  A     GTCTACTTATTATA    A          ATAAAT       TCAT
             ATA TTG  ATT  GCCACT GA ATGTT              ATTA GCCTGTGTTT      TATGGGT    
             ||| |||  |||  |||||| || |||||              |||| ||||||||||      |||||||     
             TAT AAC  TAG  TGGTGG TT TACAA              TAGT CGGGTGCAAG      ATATCTG    
  CTCTCTTAAAC   A   GG   --      T  C     --ACATTTTAACTG    C          ------       TATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2220347

TTCACGACACAAAATAATTGAAATTTTGCCACTTGAAATGTTGTCTACTTATTATAATTAAGCCTGTGTTTATAAATTATGGGTTCATATATGTCTATAGAACGTGGGCCTGATGTCAATTTTACAAACATCTTTGGTGGTGATGGCAAATATCAAATTCTCTC

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