SE2250352

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5075
  • Zea mays
  • SE2250352
  • PIF/harbinger
  • To37
  • chr10:141967752-141967948
  • TTA
  • AGGGTGTGTTTGGTTGCAATGACAGGACGGGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                 AAT      A      -G    G -  CGATCCCTCAAATAGGGTTGTTTGGTTCAGGGTCAGGGGTTGGGACAGGACTATC
  AGGGTGTGTTTGGTTGC   GACAGG CGGGAT  GGAC G GA                                                       
  |||||||||||||||||   |||||| ||||||  |||| | ||                                                        
  TCCCACACAAACCAACG   CTGTCC GTCCTG  CCTG C GG                                                       
AT                 -CC      -      TA    - A  GGACCGCAGGAGAGAGCAAGGAGGTTAAAACTCCCTATTGACCCCTGTTGTGACC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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