SE2230357

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5080
  • Zea mays
  • SE2230357
  • hAT
  • Hat25
  • chr10:65420303-65421086
  • TCTCCGGC
  • CCGGCTATAGGTGTACATTTGGGCCGGGCCTGATGGACCGGCCCGAAGCACGAAAAAAAGC

Secondary structure and sequence

TSD    TIR
5'



3'
TCT    --C                    GG    GAT  A       G    A      AAA  ----------------A     C  GCACGGCACGACACGAAATATTTTAGTGTCGGGCCGGGTTTAGGCCGAGGTCGCGGCCCATGGGCGGGCACGAGCACGGCCCGTTTAAGGCAGGCACGAAATGGCCCATATAGAGGCACGAAAAGGCCCATATATTTATTAAAATCACACTTCATTCCACACTTTCATTTACTTGATAAAGAACACAAAGCTAGAGATAATGTTAGTTAGATGTTTTTCAGCTTTGAATTAGAGTATGTGATGTAATTTTATTTTTGTTATGAACATTAGATAATGAACTGAACTTACGAACTTTATATAGAGCTGATTATACTC
   CCGG   TATAGGTGTACATTTGGGCC  GCCT   GG CCGGCCC AAGC CGAAAA   GC                 CGGCC AA                                                                                                                                                                                                                                                                                                                           
   ||||   ||||||||||||||||||||  ||||   || ||||||| |||| ||||||   ||                 ||||| ||                                                                                                                                                                                                                                                                                                                           T
   GGCC   ATATCCACATGTAAACCCGG  CGGG   CC GGCCGGG TTCG GCTTTT   CG                 GCCCA GC                                                                                                                                                                                                                                                                                                                           
  C    TCT                    --    ---  G       -    G      --C  AGCATAATAAACTTAAA     -  CCGGCTGGGCAAACTTAAAGCCCGGTACGGCCCGGCCGGGTGCCCGGATCGGGAGCCGGGCCGGGCATTAACGAATTTGCACGGCCCGAGTAAAGCCTGCCGGGCTTTAATATTTTCGGGTTTTAAGTGTAATCCCGGACTTTAAGTTAAAAACCGGGTTTTAAGTGAAGTCTCGGGCTTTAAGTTTAAAAAAATTATTTTGTTTATTTTCTATTCTGTTTATTTAAACTGGTTTTCGTTTGAATTATAAACATAATTCAATGATCTCGATATGTTACTGATGGAGCAAATGTTTAGTAAAACAATCTTTCTTTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End