SE2230358

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5081
  • Zea mays
  • SE2230358
  • hAT
  • Hat30
  • chr10:143514512-143514702
  • TTCCTGCC
  • CTTAGTAACCGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TTCCTGCC            GAACT      -    CCACGTTCCTCGTTCCGGGAACGTTCGTTCTGTTCCGGGAACGTGGGAACAATCTCGTTCCC
        CTTAGTAACCGG     GGGAAC GTGG                                                              
        ||||||||||||     |||||| ||||                                                              G
        GAATCATTGGTC     CAAGGA CTAG                                                              
CCGTCCTT            -----      C    CTACCCTAGCTCCTTGCCCTTGCACCATGTGCCATGCGATGATATTGATCCAAAATTGTGAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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