SE2250360

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5083
  • Zea mays
  • SE2250360
  • PIF/harbinger
  • To73
  • chr10:102391202-102391522
  • CAA
  • CCTGTTTGTTTCGGCTT

Secondary structure and sequence

TSD    TIR
5'



3' 
CAAGTC        T             --   TTC   CCACCAAAAACTGCTGCGGACTGCCAAACACTCACCTTTTCAGCCAGCTTCTATAAAATTCGTTTGGGTAAAAATCATTTAAAATCAACATAAACATATAATCGGTTGAGTCGTCGCAATAGTA
      CCTGTTTG TTCGGCTTTTCGC  AGC   TGG                                                                                                                            
      |||||||| |||||||||||||  |||   |||                                                                                                                             
      GGACAAAC AAGTCGAAAAAAG  TGG   TCG                                                                                                                            
AACCCC        C             AC   ---   AAAAAGCTCTTAGATCTACATCCCTCTTAGACCGACACATCTCTTAGACTCATAGTAATCCTAATGCACGCTTCCTTCTATTTCAACAGATACCCCCAAGTTCTAGATATTTCACTGCCTAATG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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