Plant MITE

SE2230365

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5088
Zea mays
SE2230365
hAT
Hat13
chr10:82198176-82198734
ATCAAGCA
TAGGGGTGGGCATTT

Secondary structure and sequence

TSD TIR

5'

3'

ATCAAGCA     G         TAAAACCGAA       -    ---       -ACC     ----   --         ATTGTCGGTCTATTCGGGTTTTCGGGTTCGGGTTCGGTTCCTATTTGTGCTATATTTCGGGGTATGGGTTCCGGTTCCTAACCTTTAAAACCCGAATAGACCTAATAACCCGAAATATAAAAAAGCTCTTAATATGTGATAGTATTATTATATGATTTATGAACTTATTAGCTAGAAATAATGATATCATCTTAACAATAGTATATA
        TAGGG TGGGCATTT          AACCGAA CCCG   AACCCGA    GAACC    CGA  ATAGACCGA                                                                                                                                                                                                               
        ||||| |||||||||          ||||||| ||||   |||||||    |||||    |||  |||||||||                                                                                                                                                                                                               T
        ATCCC ACCCGTAAG          CAGATAA CCCA   AGCCAAG    ATAAG    AAC  TTTAAAGCC                                                                                                                                                                                                               
ACGAACTA     G         ---------C       T    TTA       CCAG     CCCA   AC         CAAGACTTTTTATTCTTGGCTTTAAAAGTTTTTATAAAATCCTTGGCTTGGGCTTATCTGAGTGTTAAAGCCAAGCCAGATAAGCCAGGTGGCTTATCTGGGCTTAACATCTCTCTGATCATATAAAACAATTTTATATATGTTACTTATTAATTAACTTTCATGATAATGATGTTGTTCACTGATATTTTTAATCGTATGTTTCTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2230365

ATCAAGCATAGGGGTGGGCATTTTAAAACCGAAAACCGAACCCGAACCCGAACCGAACCCGAATAGACCGAATTGTCGGTCTATTCGGGTTTTCGGGTTCGGGTTCGGTTCCTATTTGTGCTATATTTCGGGGTATGGGTTCCGGTTCCTAACCTTTAAAACCCGAATAGACCTAATAACCCGAAATATAAAAAAGCTCTTAATATGTGATAGTATTATTATATGATTTATGAACTTATTAGCTAGAAATAATGATATCATCTTAACAATAGTATATATATCTTTGTATGCTAATTTTTATAGTCACTTGTTGTAGTAATAGTACTTTCAATTAATTATTCATTGTATATATTTTAACAAAATATACTAGTCTCTCTACAATTCGGGTCTATTCGGTGGACCGAATAGACCGAACCGAAATTGTGAGTCTATTCGGGTTCGGTTCCTAAAATATTTTTGAAAATTTCGGTTCTTATTTTTCAGAACCCGAAATTTCACAAACCCGAATAGACCGAACCGAATTACCCTAATAGACCGAATGCCCAGCCCTAATCAAGCA

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