SE2230371

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5094
  • Zea mays
  • SE2230371
  • hAT
  • Hat23
  • chr10:18533249-18533709
  • GTCTAAAC
  • ACTATAGATGTCCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
GTCTAA    T          TAAGC   A    - G  A      CACGAA     CTTTTTGGGCCCGGTCCGAGCCCGGCAAGGCCCGGTTATATGGGGGCCCGGGCCGGCCCGGCACGAATAAGCGGGTCGGGCTCGGACAGGAAATTAGGCACGGTGGGCTAGCCCGGCACGGCCCGTTTAGCTCTAAGCCCGTTAAGCCCGCTTTTTTACACTAAAACGTGCTTTTCGGCC
      ACTA AGATGTCCAA     ACG GGCC C CG GCCCGG      GCCCG                                                                                                                                                                                    
      |||| ||||||||||     ||| |||| | || ||||||      |||||                                                                                                                                                                                     
      TGAT TCTACAGGTT     TGC CCGG G GC CGGGCC      GGCCG                                                                                                                                                                                    
CAAATC    C          -----   -    C G  -      -----A     GGCCCGGGCCACTTCGGACCGGGCAAAACCCGGGCCTGGCGGTCCGTGCTAATTTTTTGGCCCGGCCCGGCCGATTCGTGCGCCCGAGTTAAAGAACAGGCTCGGGCCGGGCGTTGCCCGGATTTGCCCGGCCCAGCCGGGTAAATCGTGCTTTTTTGCCCGGCTTTTCGCCCGATACGC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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