SE2230372

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5095
  • Zea mays
  • SE2230372
  • hAT
  • Hat7
  • chr10:1925940-1926525
  • GGCGCGTC
  • GGCGCGTCTAGTGCTGGGAATTGGGCC

Secondary structure and sequence

TSD    TIR
5'



3' 
                     -               C   C     CAAGCCCATCGTGCTTCGTGCCAAACGGGTTCGGGCCAGGAAAGCCCAAACATTTTTTGGGCCGTGCCGTGCCAGCCCGAAGTGTAAAAACAGTGGCCCAGCCCGGCCCTAAACCACGTCGTGCCTTCGTTGGGCCGTGCCGGCCCAAGCCCGGCCCGTATATTTGACCACATAAAATCAAAATATTATAATCATATAAAATTCATAGCTTACTAAATTAAAGATATTAAACAATTATAACATTATT
GGCGCGTCTAGTGCTGGGAAT TGGGCCGGGCCGGGC AGC CGGCC                                                                                                                                                                                                                                                       
||||||||||||||||||||| ||||||||||||||| ||| |||||                                                                                                                                                                                                                                                       T
CTGCGCGGATCACGACCCTTA ACCCGGCCCGAAAAG CCC GGTCG                                                                                                                                                                                                                                                       
                     G               -   -     TGCTCGTGCCGGGCTTTTATTCTCGGGTTTCGTGCCAGGCCGTGCTTTATTATACCCGGCCCGATCGTGCCGGGCTTCAGCCCGAACCCGGCCCGGAGTTAAAGGCTGGGCAGCCCGGGGGTCGTGCCGTGCGTATCTACCCGGCCCGAACCCGGCCGTGCCGGGTTAACTCGGGTTAGATAAATTAAAGAAATTAAATCATTCTATAGCTGACATATAACAACAATATAAACCTCAAATACACCAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3