Plant MITE

SE2230373

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5096
Zea mays
SE2230373
hAT
Hat48
chr10:63800037-63800327
CATCTAAC
TAGGGATGTAAATGG

Secondary structure and sequence

TSD TIR

5'

3'

CATCTAAC           -----------    TACA        C     -    TCGATTCATCTAGAGGGCTGACATCCGATTCGTATCTGAGTCCAGTTATTCAGTATCCAATCCGTATCTGATCTATATCCATATCCGTATACTCA
        TAGGGATGTAA           ATGG    GATATTAT CGTTC GAAT                                                                                               
        |||||||||||           ||||    |||||||| ||||| ||||                                                                                                
        ATCCCTACATT           TACC    CTATAATG GCAAG TATA                                                                                               
CAGTCTAC           AGCATAGCCTA    -TAC        A     G    AACAAAAGTATAAAAGAGAAGCCTAGCCTATGCCTATAACAACTCAACACAGCCTATTCTAAACTTATCTATAGGTGTAGAATTTATAGGTTGAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2230373

CATCTAACTAGGGATGTAAATGGTACAGATATTATCCGTTCGAATTCGATTCATCTAGAGGGCTGACATCCGATTCGTATCTGAGTCCAGTTATTCAGTATCCAATCCGTATCTGATCTATATCCATATCCGTATACTCAAAGTTGGATATTTAAGATGTGGATATCTATTCAAATCTTATCCGACACAACTCAACAATATCCGTATCCGATCCGAAGAGAAAATATGAAAACAAATATGGAACGAGTAATATCCATCCATATCCGATACGATTACATCCCTACATCTGAC

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