Plant MITE

SE2250376

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5099
Zea mays
SE2250376
PIF/harbinger
To21
chr8:141352189-141352479
TTA
AGAGCATCTCCAACAACGTGAC

Secondary structure and sequence

TSD TIR

5'

3'

TT               AC     ATATAAAAA   -    T  TTTAAAAATAAGTATATTTTATAGAATTTAGGGCACCAACAAAACACCTCGCTCCAACAGTAAAGCCCCAAATCTAGATTATAGGGCAGCCCACTACGGTGTAGT
  AGAGCATCTCCAACA  GTGAC         TGC CCTA AA                                                                                                         
  |||||||||||||||  |||||         ||| |||| ||                                                                                                          
  TCTCGTAGAGGTTGT  TACTG         ATC CGGA GT                                                                                                         
AT               --     ---AGTTTG   A    -  TTAACTTTATACTCCGAGATGTGTCCTATTTGATGAGGTTGTCACGGGATAAAGTATTTAAAAACAGTTTTTTGATATCCCGTGGGAGAGTTCACTGAGTTTATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2250376

TTAGAGCATCTCCAACAACGTGACATATAAAAATGCCCTATAATTTAAAAATAAGTATATTTTATAGAATTTAGGGCACCAACAAAACACCTCGCTCCAACAGTAAAGCCCCAAATCTAGATTATAGGGCAGCCCACTACGGTGTAGTATATTTGAGTCACTTGAGAGGGTGCCCTATAGTTTTTTGACAAAAATTTATGAAATAGGGCACTGTTGGAGTAGTTTATCCTGTGTAGAGCCTCATATTTCAATTTGAGGCACTAGTTTGAGTCATTGTTGGAGATGCTCTTA

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