Plant MITE

SE2250377

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5100
Zea mays
SE2250377
PIF/harbinger
To16
chr8:27495273-27495641
TTA
AGGCCCTGTTTGGAATTGTAGTATTTTTGTAGTTTT

Secondary structure and sequence

TSD TIR

5'

3'

TT   C         AAT      A   ------          -AAAAC    ----   TGGTATTTGATGATACTATAGTATTAGAGCTTAAAAGGTGTTTGGTTTGTAGAGTCAAAACTCAGTTTTAAATATCATGGTTTACTCAAAACTGCGGTATTTTTGGAGTTTTCGAAACTCCATTCAGGA
  AGG CCTGTTTGG   TGTAGT TTT      TTGTAGTTTT      AATA    CTA                                                                                                                                 
  ||| |||||||||   |||||| |||      ||||||||||      ||||    |||                                                                                                                                 C
  TCC GGACAAACC   ACATCA AAA      GACATCAAAA      TATA    ATG                                                                                                                                 
AT   C         CTT      -   TTTTAT          CTCTAT    TCAA   TTAACATGTACTGTATTTATGATGCCATAACGAAATGGTGTTATTTTAATATCATAACGAGTTTTTGCTCTAGACAAACCAAGATAACATTTTTGTTTCATATACATCTCTCTTCTCTTCTTTTGACTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2250377

TTAGGCCCTGTTTGGAATTGTAGTATTTTTGTAGTTTTAAAACAATACTATGGTATTTGATGATACTATAGTATTAGAGCTTAAAAGGTGTTTGGTTTGTAGAGTCAAAACTCAGTTTTAAATATCATGGTTTACTCAAAACTGCGGTATTTTTGGAGTTTTCGAAACTCCATTCAGGACCTCAGTTTTCTTCTCTTCTCTCTACATATACTTTGTTTTTACAATAGAACCAAACAGATCTCGTTTTTGAGCAATACTATAATTTTATTGTGGTAAAGCAATACCGTAGTATTTATGTCATGTACAATTGTAAACTATATTATCTCAAAACTACAGTATTTTAAAACTACATTCCCAAACAGGCCCTTA

Copy Cancel