Plant MITE

SE2210380

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5103
Zea mays
SE2210380
Tc1/Mariner
St13
chr8:74988929-74989263
TA
TACTCCCTCCAGTGCAGTAAAGGTAGTCGT

Secondary structure and sequence

TSD TIR

5'

3'

          A            T        -    -   GAT  TACATACCAAGGAGTGATTAATTATCATAGAGTTTTCCCTGTTTGCCCCTATTAAATAGGGATATGGGTGCATTAATGTCACTAAAATAATCAGGCTTGATTGGTTGCTGCAGCAGCTCCAAGG
TACTCCCTCC GTGCAGTAAAGG AGTCGTTT AGGA CAT   TG                                                                                                                            
|||||||||| |||||||||||| |||||||| |||| |||   ||                                                                                                                             
ATGAGGGAGG CACGTCATTTTC TCAGTACG CGCG ATT   GG                                                                                                                            
          C            T        A    C   ---  CTCACACGTGTTTTTCTTCAGTATCGCGCGCACCCAGACCCTAAACCTGCAACAACGGGGATCATTAACGTGTTTTTTTCTACGTAAATTCTCCTTAGCTTGAACTCTGGAGGTCAGATCTTAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2210380

TACTCCCTCCAGTGCAGTAAAGGTAGTCGTTTAGGACATGATTGTACATACCAAGGAGTGATTAATTATCATAGAGTTTTCCCTGTTTGCCCCTATTAAATAGGGATATGGGTGCATTAATGTCACTAAAATAATCAGGCTTGATTGGTTGCTGCAGCAGCTCCAAGGCATTCTAGACTGGAGGTCTCAAGTTCGATTCCTCTTAAATGCATCTTTTTTTGTGCAATTACTAGGGGCAACAACGTCCAAATCCCAGACCCACGCGCGCTATGACTTCTTTTTGTGCACACTCGGTTACGCGCAGCATGACTTCTTTTACTGCACCGGAGGGAGTA

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