Plant MITE

SE2250384

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5107
Zea mays
SE2250384
PIF/harbinger
To3
chr8:83125507-83125798
TAG
TAGG

Secondary structure and sequence

TSD TIR

5'

3'

     GGGG       A            -----          GGAAG            --  CTCAAATACTGCAGTATTATATACAGAATGGTGTTTGGCAAGCTGGCTAAAATCTCTGTTTTCAAAACTGAAGTATTGCAAATACTAT
 TAGG    TGTTTGG AGTGAAGTTTTT     TCACAGTTTT     AATACTGCAGTA  TT                                                                                        
 ||||    ||||||| ||||||||||||     ||||||||||     ||||||||||||  ||                                                                                         
 ATCC    ACAAACC TTGTTTCAAAAA     GGTGTCAAAA     ACTTTATGATGT  TA                                                                                        
G    -GGG       C            CTTTT          -----            CA  TGAAATCAGTACTGTTATGGCGTCAAATGTTATGGCGTCAAAACTTTTGACTCCAGGTCTGGATCCAAATCTTATGGAATTTTGTTGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2250384

TAGGGGGGTGTTTGGAAGTGAAGTTTTTTCACAGTTTTGGAAGAATACTGCAGTATTCTCAAATACTGCAGTATTATATACAGAATGGTGTTTGGCAAGCTGGCTAAAATCTCTGTTTTCAAAACTGAAGTATTGCAAATACTATAGTTGTTTTAAGGTATTCTAAACCTAGGTCTGGACCTCAGTTTTCAAAACTGCGGTATTGTAAACTGCGGTATTGTCATGACTAAAGTATACTGTAGTATTTCAAAAACTGTGGTTTTCAAAAACTTTGTTCCCAAACAGGGCCTAG

Copy Cancel