Plant MITE

SE2230386

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5109
Zea mays
SE2230386
hAT
Hat19
chr8:135066897-135067089
GCAAAGCC
GCAAAGCCCAGGGGCGATTCTAGGGAGGGGCACAGGGGGGC

Secondary structure and sequence

TSD TIR

5'

3'

   AAA   C        TT    ------------         ---------C        ----------------------AATGTCCCCCCTAAT     ACAAATTCCATAGA
 GC   GCC AGGGGCGA  CTAG            GGAGGGGCA          AGGGGGGC                                     CTTCT              
 ||   ||| ||||||||  ||||            |||||||||          ||||||||                                     |||||               
 CG   CGG TCCCCGCT  GGTC            TCTCCCTGT          TCCCCCCG                                     TGATT              
C  AAA   -        TC    GTAAACTCTAAC         TTAATCTAAC        ACAATTCTCCATAAAATGTAATAAATATACCACTAAT     TGTTTAATCATCGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2230386

GCAAAGCCCAGGGGCGATTCTAGGGAGGGGCACAGGGGGGCAATGTCCCCCCTAATCTTCTACAAATTCCATAGAAGCTACTAATTTGTTTAGTTAATCACCATATAAATAATGTAAAATACCTCTTAACAGCCCCCCTCAATCTAATTTGTCCCTCTCAATCTCAAATGCTGGCTTCGCCCCTGGCAAAGCC

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