SE2250388

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5111
  • Zea mays
  • SE2250388
  • PIF/harbinger
  • To82
  • chr8:9498211-9498525
  • ATA
  • G

Secondary structure and sequence

TSD    TIR
5'



3' 
ATA -    CCTTTGGCAGTGTTCTGGCCTCTTAAAACAGTTTCAGCTCTGGCTCTTTGTCTTCTTTGGAGGAGCTGGAGCCGTTTTACAAATCGTTTGGCAAGACAATTTCTTTTGTGTTTATTTTGAATGATGGATTAGGGAAATGAAGGGGGATC
   G ACCC                                                                                                                                                     
   | ||||                                                                                                                                                      
   C CGGT                                                                                                                                                     
ATA C    GAAACCGTGCTGAGAAGTTCACCGAGACTGAGCCCGAGTAGCACTTCGGATGGTTTGCAAGTGTTTTTGCCGAAGAGCAGCTTTCTGGAGTTCTTCGATCTCAGCAAAAACACAACCCTCGGTCTCGTATTTTTTGTACAGAAGATAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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