SE2250390

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5113
  • Zea mays
  • SE2250390
  • PIF/harbinger
  • To68
  • chr8:159334061-159334245
  • TCA
  • AGGGGGTGTTTGGTTTCTAGGGACTAATATTTAGTCCCTTCATTTTGTTCCATTTTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TC                            A          T                  CATAT      A                   A
  AGGGGGTGTTTGGTTTCTAGGGACTAAT TTTAGTCCCT CATTTTGTTCCATTTTAG     AAATTG CAAATATAGAAACTAAAAT 
  |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||     |||||| ||||||||||||||||||| G
  TCCCCCACAAACCAAAGATCCCTGATTA AAATCAGGGA GTAAAATAAGGTGAAATC     TTTAAT GTTTATATCTTTGATTTTG 
AC                            A          T                  AATGT      A                   A
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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