SE2250392

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5115
  • Zea mays
  • SE2250392
  • PIF/harbinger
  • To77
  • chr8:34534891-34535023
  • TTA
  • AGGCCATGTTCGTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT               GATC    AA              CA        AGGGA   GA   GATT
  AGGCCATGTTCGTTT    CCAA  TCATAGGGATTGAG  GGATTGGA     TTG  GAG    
  |||||||||||||||    ||||  ||||||||||||||  ||||||||     |||  |||     
  TCCGGTACAAGCAAA    GGTT  AGTATCCCTAACTC  CCTAATTT     GAT  TTC    
AT               ACAC    -A              TC        -AGGG   -G   AGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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