SE2250393

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5116
  • Zea mays
  • SE2250393
  • PIF/harbinger
  • To36
  • chr8:138860028-138860172
  • TAA
  • GTTTGGGTACTCTAGTATTGACCTCAATCCACTTGTATTGAGGTGGATTGGGATGTAACTTAAACTAATTTACACCCCAATCCACATCAATACATGTGGATTGAGGTCAATACTAGAGTACCCAAAC

Secondary structure and sequence

TSD    TIR
5'



3' 
TAAGACCTA                                T        G          A     C   A
         GTTTGGGTACTCTAGTATTGACCTCAATCCAC TGTATTGA GTGGATTGGG TGTAA TTA 
         |||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||| ||| A
         CAAACCCATGAGATCATAACTGGAGTTAGGTG ACATAACT CACCTAACCC ACATT AAT 
AATCCGAAA                                T        A          C     T   C
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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