SE2250398

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5121
  • Zea mays
  • SE2250398
  • PIF/harbinger
  • To33
  • chr8:12713918-12714060
  • TTA
  • AGGGCTTGTTCGGTTAGCTCTCAATCCATATGGATTGAGTGAGATTGGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT   G             C    -AAT  A         A   A       --------T   TTTAAATCCCGAG
  AGG CTTGTTCGGTTAG TCTC    CC TATGGATTG GTG GATTGGG         GGG             
  ||| ||||||||||||| ||||    || ||||||||| ||| |||||||         |||              
  TCC GAACAAGCCAATT AGGG    GG ATACCTAAC CAT CTAACCT         CTT             
AT   G             -    CAAT  -         C   C       TTTTTTATT   CTTCAAACTGAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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