SE2250399

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5122
  • Zea mays
  • SE2250399
  • PIF/harbinger
  • To26
  • chr8:171336257-171336627
  • GAA
  • GGCCCTGTTTCAATCTCACAGGATAATTTTTAGC

Secondary structure and sequence

TSD    TIR
5'



3' 
GAA                   A      T       -----TTTTT            G  - ATAAATTGAAGTGCTAAAGTTTAGCTCCTTGGGGTATTTGGACTACTCTAATAAAGTTTAGCACATTGGAATAAAAAGACACATATGCCCCTAATGCGGAGAGAGAGGGAATGAGGTTGGAGGGT
   GGCCCTGTTTCAATCTCAC GGATAA TTTTAGC          GCTAAACTTTAG CA T                                                                                                                             
   ||||||||||||||||||| |||||| |||||||          |||||||||||| || |                                                                                                                              
   CCGGGACAAAGTTAGGGTG TCTATT GAAATCG          ATCGATGAAAAT CG T                                                                                                                             
AAG                   A      T       TCGAAAAAAA            -  G AAATCACTAGATTTGTCCTCTGGATTACCACCACACTATTTTAAATCGTATATAATAGAGTATTCGACGAGTTCCCCACGATTTTCATCGATTTACACCCGGTTCCTTGGGGTAAAAGGTGGGTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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