SE2250409

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5132
  • Zea mays
  • SE2250409
  • PIF/harbinger
  • To33
  • chr8:55123909-55124051
  • TAA
  • AGGCCTTGTTCGGTTAATCCCGTTACCCATGCATTGGATGGGATTGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   C            -A     T A  -    C     A         AAAA   TAAGAAAGAGTTTGAC
  AGG CTTGTTCGGTTA  TCCCG T CC CATG ATTGG TGGGATTGG    AAT                
  ||| ||||||||||||  ||||| | || |||| ||||| |||||||||    |||                 
  TCC GAACAAGCCAAT  AGGGT A GG GTAC TAACT ACCCTAACC    CCC                
AA   C            CG     T -  T    C     C         --CA   AAATTTAGGGTTAGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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