SE2230410

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5133
  • Zea mays
  • SE2230410
  • hAT
  • Hat30
  • chr8:161867669-161867860
  • ATCCAGAC
  • TCCAGACCTTAGTAACCGG

Secondary structure and sequence

TSD    TIR
5'



3' 
A  CA  C                T  -    TTGGCCACGTTCCTCGTTCCGAGAACATTCGTTCCGTTCCGGGAACGTGGGAACAATCTCGTTCC
 TC  GA CTTAGTAACCGGGAAC GG GAAC                                                                 
 ||  || |||||||||||||||| || ||||                                                                  
 AG  CT GAATCATTGGTCCAAG GG CTAG                                                                 
C  AC  A                -  C    CTACCCTAGCTCCTTGCCCTTGCACCATGCGCTATGCGATGTTTTTTGATCCTAAATTGTGGTGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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