SE2230421

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5144
  • Zea mays
  • SE2230421
  • hAT
  • Hat51
  • chr8:133430201-133430412
  • TTCGCAGA
  • GCAGACAGTGGCGGACCCAGC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTC  A     T            TGCTAT  T   --     GCCAAGAAAAAAATAAAAAAACAAACAAAAAATAAGGATCAACAAGACTCGAACCTTGATCACCAAG
   GC GACAG GGCGGACCCAGC      GT TAG  GGTGT                                                                   
   || ||||| ||||||||||||      || |||  |||||                                                                   T
   CG TTGTC CCGCCTGGGTCG      TC CAC  GGTAT                                                                   
AGA  C     C            ------  -   CA     ACCAGGTGCCGTGTGGGATTCTAGTGTATTCACATCAATCGTATCACCACATTCACAATATAAAATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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