SE2250422

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5145
  • Zea mays
  • SE2250422
  • PIF/harbinger
  • To93
  • chr8:118006792-118006930
  • TTA
  • AGACTATCTCCAGCAGTTTACC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT     A      GC        -----CATC    TACCC     TAAACTT    ---C     ACACTAC
  AGACT TCTCCA  AGTTTACC         TCTA     ATATT       CACT    TGCGA       
  ||||| ||||||  ||||||||         ||||     |||||       ||||    |||||       A
  TCTGG AGAGGT  TCAAATGG         AGAT     TATAA       GTGA    ACGTT       
AT     C      AT        ATATCAAAT    --TTT     CAAAAAC    CAAA     ATAACTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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