SE2250423

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5146
  • Zea mays
  • SE2250423
  • PIF/harbinger
  • To33
  • chr8:171038096-171038238
  • TAA
  • AGGGCTTGTTCGGTTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                TTCCCAATACACAT        TGAGATTGGAAAAAATTGTGAAGAAGTTTGACTTGTT
  AGGGCTTGTTCGGTTA              GGATTGGA                                     
  ||||||||||||||||              ||||||||                                      
  TCCCGAACAAGCCAAT              GAGTTAGG                                     
AA                -----------CGA        TACACCTAACTCGCCCTAACCTACTCAAACTTAGGGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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