SE2250433

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5156
  • Zea mays
  • SE2250433
  • PIF/harbinger
  • To4
  • chr8:80676449-80676570
  • TTA
  • AGGGCTAGTTTGGAAAACCCATTTTTCTAAGGGATTTCTATTTTTCCAAATGAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT             A  ACC       C                  C   -A      TAG
  AGGGCTAGTTTGG AA   CATTTTT TAAGGGATTTCTATTTTT CAA  TGAAAT   
  ||||||||||||| ||   ||||||| |||||||||||||||||| |||  ||||||    
  TCCCGATCAAACC TT   GTAAAAA ATTCCCTAAAGATAAAAA GTT  ATTTTA   
AT             C  GAA       -                  T   CC      CTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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