SE2250434

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5157
  • Zea mays
  • SE2250434
  • PIF/harbinger
  • To61
  • chr8:15961953-15962086
  • TAA
  • AGGGCATGTTCGGTTATACCAATCCAGAAGAGGATTGGAGGGGATTTAATCCTCTCCTAGTCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA     A      GT              A A                                AA
  AGGGC TGTTCG  TATACCAATCCAGA G GGATTGGAGGGGATTTAATCCTCTCCTAGTCA  
  ||||| ||||||  |||||||||||||| | ||||||||||||||||||||||||||||||||   
  TCCCG ACAAGC  ATGTGGTTAGGTCT C CCTAACCTCCCCTAAATTAGGGGAGGATCAGT  
AA     A      AA              C C                                AA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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